Tools for extracting information from a FlowJo workspace and working with the data in the flowCore paradigm.

Bioconductor version: Release (2.11)

FlowJo is a commercial GUI based software package from TreeStar Inc. for the visualization and analysis of flow cytometry data. One of the FlowJo standard export file types is the "FlowJo Workspace". This is an XML document that describes files and manipulations that have been performed in the FlowJo GUI environment. This package can take apart the FlowJo workspace and deliver the data into R in the flowCore paradigm.

Author: John J. Gosink <gosinkj at amgen.com>

Maintainer: John J. Gosink <gosinkj at amgen.com>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script Basic Functions for working with FlowJo
PDF   Reference Manual


biocViews FlowCytometry, Software
Version 1.16.0
In Bioconductor since BioC 2.4 (R-2.9)
License GPL (>=3)
Depends R (>= 2.5.0), MASS,
Imports flowCore, XML (>= 1.96), methods, Biobase
System Requirements
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Package Downloads

Package Source flowFlowJo_1.16.0.tar.gz
Windows Binary flowFlowJo_1.16.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) flowFlowJo_1.16.0.tgz
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