Quality assessment and control for FFPE microarray expression data

Bioconductor version: Release (2.11)

Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).

Author: Levi Waldron

Maintainer: Levi Waldron <lwaldron at hsph.harvard.edu>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script ffpe package user guide
PDF   Reference Manual


biocViews Bioinformatics, GeneExpression, Microarray, QualityControl, Software
Version 1.2.0
In Bioconductor since BioC 2.10 (R-2.15)
License GPL (>2)
Depends R (>= 2.10.0), TTR, methods
Imports Biobase, BiocGenerics, affy, lumi, methylumi, sfsmisc
Suggests genefilter, affy, ffpeExampleData
System Requirements
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source ffpe_1.2.0.tar.gz
Windows Binary ffpe_1.2.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) ffpe_1.2.0.tgz
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