Conditional quantile normalization

Bioconductor version: Release (2.11)

A normalization tool for RNA-Seq data, implementing the conditional quantile normalization method.

Author: Jean (Zhijin) Wu, Kasper Daniel Hansen

Maintainer: Kasper Daniel Hansen <khansen at jhsph.edu>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script CQN (Conditional Quantile Normalization)
PDF   Reference Manual
Text   NEWS


biocViews DifferentialExpression, Preprocessing, RNAseq, Software
Version 1.4.0
In Bioconductor since BioC 2.9 (R-2.14)
License Artistic-2.0
Depends R (>= 2.10.0), mclust, nor1mix, stats, preprocessCore, splines, quantreg
Imports splines
Suggests scales, edgeR
System Requirements
Depends On Me
Imports Me tweeDEseq
Suggests Me

Package Downloads

Package Source cqn_1.4.0.tar.gz
Windows Binary cqn_1.4.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) cqn_1.4.0.tgz
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