Analyze, manage and store bisulfite sequencing data

Bioconductor version: Release (2.11)

Tools for analyzing and visualizing bisulfite sequencing data

Author: Kasper Daniel Hansen

Maintainer: Kasper Daniel Hansen <khansen at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script Analyzing WGBS with bsseq
PDF R Script The bsseq user's guide
PDF   Reference Manual
Text   NEWS


biocViews DNAMethylation, Software
Version 0.6.2
In Bioconductor since BioC 2.11 (R-2.15)
License Artistic-2.0
Depends R (>= 2.15), methods, BiocGenerics, IRanges, GenomicRanges, parallel, matrixStats
Imports scales, stats, graphics, Biobase, locfit
Suggests RUnit, bsseqData
System Requirements
Depends On Me bsseqData
Imports Me
Suggests Me

Package Downloads

Package Source bsseq_0.6.2.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) bsseq_0.6.2.tgz
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