TEQC
Quality control for target capture experiments
Bioconductor version: Release (2.11)
Target capture experiments combine hybridization-based (in solution or on microarrays) capture and enrichment of genomic regions of interest (e.g. the exome) with high throughput sequencing of the captured DNA fragments. This package provides functionalities for assessing and visualizing the quality of the target enrichment process, like specificity and sensitivity of the capture, per-target read coverage and so on.
Author: M. Hummel, S. Bonnin, E. Lowy, G. Roma
Maintainer: Manuela Hummel <manuela.hummel at crg.es>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("TEQC")
To cite this package in a publication, start R and enter:
citation("TEQC")
Documentation
| R Script | TEQC | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Bioinformatics, Genetics, HighThroughputSequencing, Microarray, QualityControl, Software |
| Version | 2.6.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) |
| License | GPL (>= 2) |
| Depends | methods, BiocGenerics(>= 0.1.0), IRanges(>= 1.13.5), Rsamtools, hwriter |
| Imports | Biobase(>= 2.15.1) |
| Suggests | |
| System Requirements | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me |
Package Downloads
| Package Source | TEQC_2.6.0.tar.gz |
| Windows Binary | TEQC_2.6.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) | TEQC_2.6.0.tgz |
| Package Downloads Report | Download Stats |
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