Epigenomic tools

Bioconductor version: Release (2.11)

Tools for the analysis of enrichment-based epigenomic data. Features include summarization and visualization of epigenomic data across promoters according to gene expression context, finding regions of differential methylation/binding, etc.

Author: Mark Robinson <mark.robinson at>, Dario Strbenac <d.strbenac at>, Aaron Statham <a.statham at>

Maintainer: Mark Robinson <mark.robinson at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF qc-cpgPlot.pdf
PDF qc-enrPlot.pdf
PDF R Script Using Repitools for Epigenomic Sequencing Data
PDF visualisations-binPlotsHeatmap.pdf
PDF visualisations-binPlotsLine.pdf
PDF visualisations-cluPlots3.pdf
PDF visualisations-profPlots.pdf
PDF   Reference Manual


biocViews DNAMethylation, GeneExpression, Methylseq, Software
Version 1.4.2
In Bioconductor since BioC 2.9 (R-2.14)
License LGPL (>= 2)
Depends R (>= 2.13.0), methods, BiocGenerics(>= 0.1.0), GenomicRanges(>= 1.7.8)
Imports BiocGenerics, IRanges(>= 1.13.5), GenomicRanges, BSgenome, gplots, grid, MASS, gsmoothr, edgeR(>= 2.99.2), DNAcopy, Ringo, aroma.affymetrix
Suggests GenomicRanges, IRanges, BSgenome, gplots, grid, MASS, gsmoothr, edgeR, DNAcopy, Ringo, aroma.affymetrix, ShortRead, BSgenome.Hsapiens.UCSC.hg18
System Requirements
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source Repitools_1.4.2.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) Repitools_1.4.2.tgz
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