NuPoP

An R package for nucleosome positioning prediction

Bioconductor version: Release (2.11)

NuPoP is an R package for Nucleosome Positioning Prediction.This package is built upon a duration hidden Markov model proposed in Xi et al, 2010; Wang et al, 2008. The core of the package was written in Fotran. In addition to the R package, a stand-alone Fortran software tool is also available at http://nucleosome.stats.northwestern.edu.

Author: Ji-Ping Wang <jzwang at northwestern.edu>; Liqun Xi <lxi700 at northwestern.edu>

Maintainer: Ji-Ping Wang<jzwang at northwestern.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("NuPoP")

To cite this package in a publication, start R and enter:

    citation("NuPoP")

Documentation

Details

Package Downloads