MiRNA Ranking by Gene Expression

Bioconductor version: Release (2.11)

The package contains functions for inferece of target gene regulation by miRNA, based on only target gene expression profile.

Author: Y-h. Taguchi <tag at granular.com>

Maintainer: Y-h. Taguchi <tag at granular.com>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script How to use MiRaGE Package
PDF   Reference Manual


biocViews GeneExpression, HighThroughputSequencingData, Microarray, RNAseq, RNAseqData, SAGE, Sequencing, Software
Version 1.0.0
In Bioconductor since BioC 2.11 (R-2.15)
License GPL
Depends R (>= 2.12.1), Biobase(>= 2.16.0)
Imports AnnotationDbi, BiocGenerics
Suggests seqinr (>= 3.0.3), biomaRt(>= 2.6.0), GenomicFeatures(>= 1.8.1), Biostrings(>= 2.24.1), BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm9, miRNATarget, humanStemCell, IRanges, GenomicRanges(>= 1.8.3), BSgenome, beadarrayExampleData
System Requirements
Depends On Me
Imports Me
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Package Downloads

Package Source MiRaGE_1.0.0.tar.gz
Windows Binary MiRaGE_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) MiRaGE_1.0.0.tgz
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