GeneticsPed

Pedigree and genetic relationship functions

Bioconductor version: Release (2.11)

Classes and methods for handling pedigree data. It also includes functions to calculate genetic relationship measures as relationship and inbreeding coefficients and other utilities. Note that package is not yet stable. Use it with care!

Author: Gregor Gorjanc and David A. Henderson <dnadave at comcast.net>, with code contributions by Brian Kinghorn and Andrew Percy (see file COPYING)

Maintainer: David Henderson <DNADavenator at GMail.Com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GeneticsPed")

To cite this package in a publication, start R and enter:

    citation("GeneticsPed")

Documentation

PDF	R Script	Calculation of genetic relatedness/relationship between individuals in the pedigree
PDF	R Script	Pedigree handling
PDF	R Script	Quantitative genetic (animal) model example in R
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Genetics, Software
Version	1.20.0
In Bioconductor since	BioC 2.0 (R-2.5)
License	LGPL (>= 2.1)
Depends	R (>= 2.4.0), gdata (>= 2.3.0), genetics (>= 1.3.0), MASS
Imports
Suggests	RUnit, gtools
System Requirements
URL	http://rgenetics.org
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source	GeneticsPed_1.20.0.tar.gz
Windows Binary	GeneticsPed_1.20.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard)	GeneticsPed_1.20.0.tgz
Package Downloads Report	Download Stats

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