Differential Binding Analysis of ChIP-Seq peak data

Bioconductor version: Release (2.11)

Compute differentially bound sites from multiple ChIP-seq experiments using affinity (quantitative) data. Also enables occupancy (overlap) analysis and plotting functions.

Author: Rory Stark<rory.stark at cancer.org.uk>, Gordon Brown <gordon.brown at cancer.org.uk>

Maintainer: Rory Stark<rory.stark at cancer.org.uk>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script DiffBind User's Guide
PDF   Reference Manual
Text   NEWS


biocViews Bioinformatics, ChIPseq, HighThroughputSequencing, Software
Version 1.4.2
In Bioconductor since BioC 2.9 (R-2.14)
License Artistic-2.0
Depends R (>= 2.14.0), GenomicRanges
Imports RColorBrewer, amap, edgeR(>= 2.3.58), gplots, DESeq, grDevices, stats, utils, IRanges, zlibbioc
Suggests DESeq
System Requirements
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source DiffBind_1.4.2.tar.gz
Windows Binary DiffBind_1.4.2.zip (32- & 64-bit)
MacOS 10.5 (Leopard) DiffBind_1.4.2.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center