DeconRNASeq

Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data

Bioconductor version: Release (2.11)

DeconSeq is an R package for deconvolution of heterogeneous tissues based on mRNA-Seq data. It modeled expression levels from heterogeneous cell populations in mRNA-Seq as the weighted average of expression from different constituting cell types and predicted cell type proportions of single expression profiles.

Author: Ting Gong <tinggong at gmail.com> Joseph D. Szustakowski <joseph.szustakowski at novartis.com>

Maintainer: Ting Gong <tinggong at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("DeconRNASeq")

To cite this package in a publication, start R and enter:

    citation("DeconRNASeq")

Documentation

PDF R Script DeconRNASeq Demo
PDF   Reference Manual

Details

biocViews Bioinformatics, ExperimentData, RNAExpressionData, Software
Version 1.0.0
In Bioconductor since BioC 2.11 (R-2.15)
License GPL-2
Depends R (>= 2.14.0), limSolve, pcaMethods, ggplot2, grid
Imports
Suggests
System Requirements
URL
Depends On Me
Imports Me
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Package Downloads

Package Source DeconRNASeq_1.0.0.tar.gz
Windows Binary DeconRNASeq_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) DeconRNASeq_1.0.0.tgz
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