DEGseq

Identify Differentially Expressed Genes from RNA-seq data

Bioconductor version: Release (2.11)

DEGseq is an R package to identify differentially expressed genes from RNA-Seq data.

Author: Likun Wang <wanglikun at tsinghua.edu.cn> and Xi Wang <wang-xi05 at mails.tsinghua.edu.cn>.

Maintainer: Likun Wang <wanglikun at tsinghua.edu.cn>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("DEGseq")

To cite this package in a publication, start R and enter:

    citation("DEGseq")

Documentation

PDF R Script DEGseq
PDF   Reference Manual

Details

biocViews DifferentialExpression, GeneExpression, Preprocessing, RNAseq, Software
Version 1.12.0
In Bioconductor since BioC 2.5 (R-2.10)
License LGPL (>=2)
Depends R (>= 2.8.0), qvalue, samr, methods
Imports graphics, grDevices, methods, stats, utils
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System Requirements
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Package Downloads

Package Source DEGseq_1.12.0.tar.gz
Windows Binary DEGseq_1.12.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) DEGseq_1.12.0.tgz
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