Simulation of ChIP-seq experiments

Bioconductor version: Release (2.11)

A general framework for the simulation of ChIP-seq data. Although currently focused on nucleosome positioning the package is designed to support different types of experiments.

Author: Peter Humburg

Maintainer: Peter Humburg <Peter.Humburg at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script Simulating ChIP-seq experiments
PDF   Reference Manual


biocViews Bioinformatics, ChIPseq, Infrastructure, Software
Version 1.12.0
In Bioconductor since BioC 2.5 (R-2.10)
License GPL (>= 2)
Depends Biostrings
Imports IRanges, Biostrings, ShortRead, graphics, methods, stats, utils
Suggests actuar, zoo
System Requirements
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source ChIPsim_1.12.0.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) ChIPsim_1.12.0.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center