Bioconductor version: Release (2.11)
ChIPseqR identifies protein binding sites from ChIP-seq and nucleosome positioning experiments. The model used to describe binding events was developed to locate nucleosomes but should flexible enough to handle other types of experiments as well.
Author: Peter Humburg
Maintainer: Peter Humburg <peter.humburg at well.ox.ac.uk>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("ChIPseqR")
To cite this package in a publication, start R and enter:
citation("ChIPseqR")
R Script | Introduction to ChIPseqR | |
Reference Manual |
biocViews | Bioinformatics, ChIPseq, Infrastructure, Software |
Version | 1.12.0 |
In Bioconductor since | BioC 2.5 (R-2.10) |
License | GPL (>= 2) |
Depends | R (>= 2.10.0), methods, BiocGenerics, ShortRead |
Imports | Biostrings, fBasics, GenomicRanges, graphics, grDevices, HilbertVis, IRanges, methods, ShortRead, stats, timsac, utils |
Suggests | |
System Requirements | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me |
Package Source | ChIPseqR_1.12.0.tar.gz |
Windows Binary | ChIPseqR_1.12.0.zip (32- & 64-bit) |
MacOS 10.5 (Leopard) | ChIPseqR_1.12.0.tgz |
Package Downloads Report | Download Stats |
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