CNORdt
Add-on to CellNOptR: Discretized time treatments
Bioconductor version: Release (2.11)
This add-on to the package CellNOptR handles time-course data, as opposed to steady state data in CellNOptR. It scales the simulation step to allow comparison and model fitting for time-course data. Future versions will optimize delays and strengths for each edge.
Author: A. MacNamara
Maintainer: A. MacNamara <aidan.macnamara at ebi.ac.uk>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("CNORdt")
To cite this package in a publication, start R and enter:
citation("CNORdt")
Documentation
| CNORdt-vignette-plot.pdf | ||
| R Script | Using multiple time points to train logic models to data | |
| Reference Manual |
Details
| biocViews | Bioinformatics, CellBasedAssays, CellBiology, Proteomics, Software, TimeCourse |
| Version | 1.0.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) |
| License | GPL-2 |
| Depends | R (>= 1.8.0), CellNOptR(>= 0.99), abind |
| Imports | |
| Suggests | |
| System Requirements | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me |
Package Downloads
| Package Source | CNORdt_1.0.0.tar.gz |
| Windows Binary | CNORdt_1.0.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) | CNORdt_1.0.0.tgz |
| Package Downloads Report | Download Stats |
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