CNORdt

Add-on to CellNOptR: Discretized time treatments

Bioconductor version: Release (2.11)

This add-on to the package CellNOptR handles time-course data, as opposed to steady state data in CellNOptR. It scales the simulation step to allow comparison and model fitting for time-course data. Future versions will optimize delays and strengths for each edge.

Author: A. MacNamara

Maintainer: A. MacNamara <aidan.macnamara at ebi.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("CNORdt")

To cite this package in a publication, start R and enter:

    citation("CNORdt")

Documentation

PDF CNORdt-vignette-plot.pdf
PDF R Script Using multiple time points to train logic models to data
PDF   Reference Manual

Details

biocViews Bioinformatics, CellBasedAssays, CellBiology, Proteomics, Software, TimeCourse
Version 1.0.0
In Bioconductor since BioC 2.11 (R-2.15)
License GPL-2
Depends R (>= 1.8.0), CellNOptR(>= 0.99), abind
Imports
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source CNORdt_1.0.0.tar.gz
Windows Binary CNORdt_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) CNORdt_1.0.0.tgz
Package Downloads Report Download Stats

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