CNAnorm

A normalization method for Copy Number Aberration in cancer samples

Bioconductor version: Release (2.11)

Performs ratio, GC content correction and normalization of data obtained using low coverage (one read every 100-10,000 bp) high troughput sequencing. It performs a "discrete" normalization looking for the ploidy of the genome. It will also provide tumour content if at least two ploidy states can be found.

Author: Stefano Berri <s.berri at leeds.ac.uk>, Henry M. Wood <H.M.Wood at leeds.ac.uk>, Arief Gusnanto <a.gusnanto at leeds.ac.uk>

Maintainer: Stefano Berri <s.berri at leeds.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("CNAnorm")

To cite this package in a publication, start R and enter:

    citation("CNAnorm")

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