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| arrangeSideBySide | Helper function to arrange two trellis objects side by side on a grid. |
| centromere | Coordinates of centromere |
| getCytoband | getCytoband |
| plotCytoband2 | Plots idiogram for one chromosome |
| plotIdiogram | Plots idiogram for one chromosome |
| xypanel | A panel function for plotting copy number versus physical position |
| xypanelBaf | Panel function for plotting copy number and B allele frequencies for a genomic interval. |
| xyplot | Plot copy number and physical position for a set of genomic intervals. |
| xyplot-method | Plot copy number and physical position for a set of genomic intervals. |
| xyplot2 | Plot copy number and physical position for a set of genomic intervals. |
| xyplot2-method | Plot copy number and physical position for a set of genomic intervals. |
| xyplotLrrBaf | xyplot lattice function for RangedData and oligoSnpSet objects |