![[R logo]](../../../doc/html/logo.jpg){kind=logo}
![[Up]](../../../doc/html/left.jpg){kind=small}
![[Top]](../../../doc/html/up.jpg){kind=small}
| addBlank | "pfm" methods |
| addBlank-method | "pfm" methods |
| colorset | retrieve color setting for logo |
| DNAmotifAlignment | align DNA motifs |
| getIC | "pfm" methods |
| getIC-method | "pfm" methods |
| matrixReverseComplement | "pfm" methods |
| matrixReverseComplement-method | "pfm" methods |
| pcm2pfm | convert pcm to pfm |
| pfm | "pfm" methods |
| pfm-class | Class '"pfm"' |
| plot-method | "pfm" methods |
| plotMotifLogo | plot sequence logo |
| plotMotifLogoStack | plot sequence logos stack |
| plotMotifLogoStackWithTree | plot sequence logos stack with hierarchical cluster tree |
| plotXaxis | plot x-axis |
| plotYaxis | plot y-axis |
| readPCM | read pcm from a path |