| basePath | Class '"HTMLReport"' |
| basePath-method | Class '"HTMLReport"' |
| BaseReport-class | Class '"BaseReport"' |
| baseUrl | Class '"HTMLReport"' |
| baseUrl-method | Class '"HTMLReport"' |
| CSVFile | Function for creating and initializing a CSVFile for publishing results |
| CSVFile-class | Class '"CSVFile"' |
| DataPackage | Function for creating and initializing an object of class DataPackage. |
| DataPackage-class | Class '"DataPackage"' |
| dependencies | Class '"DataPackage"' |
| dependencies-method | Class '"DataPackage"' |
| dependencies<- | Class '"DataPackage"' |
| dependencies<--method | Class '"DataPackage"' |
| filename | Methods for getting the name of a file for a CSVFile or HTMLReport. |
| filename-method | Methods for getting the name of a file for a CSVFile or HTMLReport. |
| filename-methods | Methods for getting the name of a file for a CSVFile or HTMLReport. |
| finish | Finalizing reports after publishing results |
| finish-method | Finalizing reports after publishing results |
| finish-methods | Finalizing reports after publishing results |
| HTMLReport | Creating and initializing an HTMLReport object |
| HTMLReport-class | Class '"HTMLReport"' |
| mockRnaSeqData | A counts table of mock RNA-deq data in mouse. |
| name | Class '"BaseReport"' |
| name-method | Class '"BaseReport"' |
| name<--method | Class '"BaseReport"' |
| name<--method | Class '"CSVFile"' |
| name<--method | Class '"HTMLReport"' |
| page | Class '"HTMLReport"' |
| page-method | Class '"HTMLReport"' |
| page<- | Class '"HTMLReport"' |
| page<--method | Class '"HTMLReport"' |
| path | Class '"BaseReport"' |
| path-method | Class '"BaseReport"' |
| path-method | Class '"DataPackage"' |
| path-method | Class '"HTMLReport"' |
| publish | Methods for publishing a variety of data types in selected output formats |
| publish-method | Methods for publishing a variety of data types in selected output formats |
| publish-methods | Methods for publishing a variety of data types in selected output formats |
| reportDirectory | Class '"BaseReport"' |
| reportDirectory-method | Class '"BaseReport"' |
| reportDirectory<- | Class '"BaseReport"' |
| reportDirectory<--method | Class '"BaseReport"' |
| reporting.theme | Color theme for use in ReportingTools |
| show-method | Class '"BaseReport"' |
| show-method | Class '"HTMLReport"' |
| title | Class '"BaseReport"' |
| title-method | Class '"BaseReport"' |
| title<- | Class '"BaseReport"' |
| title<--method | Class '"BaseReport"' |
| url-method | Class '"HTMLReport"' |
| validConnection | Determine connection validity |