Qualitiy Control of Gated Flow Cytometry Experiments

Documentation for package ‘QUALIFIER’ version 1.2.0

DESCRIPTION file.
Overview of user guides and package vignettes; browse directory.
Package NEWS.

Help Pages

QUALIFIER-package	QUALIFIER: A package that provides automated flow data quality assessment based on gated cell populations
clearCheck	Perform the quality assessment for the qaTask object
db	Some preprocessing steps before the QA check and plot.
description,qaTask	'qaTask': a class for storing important information of flow cytometry data quality assessment task
formula,qaTask	'qaTask': a class for storing important information of flow cytometry data quality assessment task
getData,qaTask	'qaTask': a class for storing important information of flow cytometry data quality assessment task
getName,qaTask	'qaTask': a class for storing important information of flow cytometry data quality assessment task
getPop,qaTask	'qaTask': a class for storing important information of flow cytometry data quality assessment task
getQAStats	Some preprocessing steps before the QA check and plot.
getQAStats-method	Some preprocessing steps before the QA check and plot.
getQAStats-methods	Some preprocessing steps before the QA check and plot.
highlight	'qaTask': a class for storing important information of flow cytometry data quality assessment task
highlight-method	'qaTask': a class for storing important information of flow cytometry data quality assessment task
highlight<-	'qaTask': a class for storing important information of flow cytometry data quality assessment task
highlight<--method	'qaTask': a class for storing important information of flow cytometry data quality assessment task
htmlReport	'qaTask': a class for storing important information of flow cytometry data quality assessment task
htmlReport-method	'qaTask': a class for storing important information of flow cytometry data quality assessment task
htmlReport<-	'qaTask': a class for storing important information of flow cytometry data quality assessment task
htmlReport<--method	'qaTask': a class for storing important information of flow cytometry data quality assessment task
initDB	Some preprocessing steps before the QA check and plot.
makeQaTask	'qaTask': a class for storing important information of flow cytometry data quality assessment task
outlier.cutoff	outliers detection functions
outlier.norm	outliers detection functions
outlier.t	outliers detection functions
outlierFunctions	outliers detection functions
plot	plot the statistics for a particular cell population of a group of samples
plot-method	plot the statistics for a particular cell population of a group of samples
plotType,qaTask	'qaTask': a class for storing important information of flow cytometry data quality assessment task
proportion.outliers.mle	outliers detection functions
proportion.outliers.robust	outliers detection functions
qaCheck	Perform the quality assessment for the qaTask object
qaCheck-method	Perform the quality assessment for the qaTask object
qaCheck-methods	Perform the quality assessment for the qaTask object
qaCheckList	Some preprocessing steps before the QA check and plot.
qaID,qaTask	'qaTask': a class for storing important information of flow cytometry data quality assessment task
qaLevel,qaTask	'qaTask': a class for storing important information of flow cytometry data quality assessment task
qaPreprocess	Some preprocessing steps before the QA check and plot.
qaReport	create quality assessment report
qaReport-method	create quality assessment report
qaReport-methods	create quality assessment report
qaTask	'qaTask': a class for storing important information of flow cytometry data quality assessment task
qaTask-class	'qaTask': a class for storing important information of flow cytometry data quality assessment task
qoutlier	outliers detection functions
qpar	'qaTask': a class for storing important information of flow cytometry data quality assessment task
qpar-method	'qaTask': a class for storing important information of flow cytometry data quality assessment task
qpar<-	'qaTask': a class for storing important information of flow cytometry data quality assessment task
qpar<--method	'qaTask': a class for storing important information of flow cytometry data quality assessment task
QUALIFIER	QUALIFIER: A package that provides automated flow data quality assessment based on gated cell populations
queryStats	Perform the quality assessment for the qaTask object
queryStats-method	Perform the quality assessment for the qaTask object
read.qaTask	'qaTask': a class for storing important information of flow cytometry data quality assessment task
rFunc	'qaTask': a class for storing important information of flow cytometry data quality assessment task
rFunc-method	'qaTask': a class for storing important information of flow cytometry data quality assessment task
rFunc<-	'qaTask': a class for storing important information of flow cytometry data quality assessment task
rFunc<--method	'qaTask': a class for storing important information of flow cytometry data quality assessment task
rlm	Perform the quality assessment for the qaTask object
saveToDB	Some preprocessing steps before the QA check and plot.
scatterPar	'qaTask': a class for storing important information of flow cytometry data quality assessment task
scatterPar-method	'qaTask': a class for storing important information of flow cytometry data quality assessment task
scatterPar<-	'qaTask': a class for storing important information of flow cytometry data quality assessment task
scatterPar<--method	'qaTask': a class for storing important information of flow cytometry data quality assessment task
show,qaTask	'qaTask': a class for storing important information of flow cytometry data quality assessment task
tubesevents	Some preprocessing steps before the QA check and plot.