Exploratory analysis and differential expression for RNA-seq data

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Documentation for package ‘NOISeq’ version 1.1.5

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addData Create an object of eSet class
Biodetection Biodetection class
Biodetection-class Biodetection class
CD CD class
CD-class CD class
CountsBio CountsBio class
CountsBio-class CountsBio class
dat Exploration of expression data.
dat2save -
dat2save-method Biodetection class
dat2save-method CD class
dat2save-method CountsBio class
dat2save-method DLBio class
dat2save-method Saturation class
DE.plot Plot to compare expression values for two conditions or to represent differential expression statistics
degenes Recover the differencially expressed features
DLBio DLBio class
DLBio-class DLBio class
explo.plot Exploratory plots for sequencing data.
explo.plot-method Biodetection class
explo.plot-method CD class
explo.plot-method CountsBio class
explo.plot-method DLBio class
explo.plot-method Saturation class
mybiotypes Marioni's dataset
mychroms Marioni's dataset
myCounts Class myCounts
mycounts Marioni's dataset
myCounts-class Class myCounts
mydata Example of objects used and created by the NOISeq package
myfactors Marioni's dataset
mylength Marioni's dataset
mynoiseq Example of objects used and created by the NOISeq package
noiseq Differential expression method
Output Output class of NOISeq
Output-class Output class of NOISeq
readData Create an object of eSet class
rpkm Normalization methods
Saturation Saturation class
Saturation-class Saturation class
show-method Biodetection class
show-method CD class
show-method CountsBio class
show-method DLBio class
show-method Output class of NOISeq
show-method Saturation class
tmm Normalization methods
uqua Normalization methods