An R interface to the Ontology Lookup Service


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Documentation for package ‘rols’ version 1.0.2

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rols-package R OLS interface
allIds Returns all identifiers and terms of an ontology
as.character.CVParam Class '"CVParam"'
as.character.Map Coerce 'Map' to a 'data.frame'
as.character.mapItem Coerce 'mapItem' to a 'character'
childrenRelations Returns the children relation type(s).
coerce-method Class '"CVParam"'
CVParam Class '"CVParam"'
CVParam-class Class '"CVParam"'
isIdObsolete Is the ontology id obsolete
key 'key' slot accessor.
key-method 'key' slot accessor.
map 'Map' slot accessor.
map-method 'Map' slot accessor.
olsQuery Returns matching identifiers
olsVersion Returns the OLS version
ontologies Returns all available ontologies
ontologyLoadDate Returns the ontology load date
ontologyNames Returns all ontologyNames
parents Returns the parent(s) of a term.
rep-method Class '"CVParam"'
rols R OLS interface
rootId Retuns the root identifiers of an ontology
show 'Map' show method
show-method Class '"CVParam"'
show-method 'Map' show method
show?Map 'Map' show method
term Returns the term of a given identifier
termMetadata Retuns an identifier's metadata
termXrefs Returns the idenifier's ontology cross references
value 'value' slot accessor.
value-method 'value' slot accessor.