addBlank | "pfm" methods |
addBlank-method | "pfm" methods |
colorset | retrieve color setting for logo |
DNAmotifAlignment | align DNA motifs |
getIC | "pfm" methods |
getIC-method | "pfm" methods |
matrixReverseComplement | "pfm" methods |
matrixReverseComplement-method | "pfm" methods |
pcm2pfm | convert pcm to pfm |
pfm | "pfm" methods |
pfm-class | Class '"pfm"' |
plot-method | "pfm" methods |
plotMotifLogo | plot sequence logo |
plotMotifLogoStack | plot sequence logos stack |
plotMotifLogoStackWithTree | plot sequence logos stack with hierarchical cluster tree |
plotXaxis | plot x-axis |
plotYaxis | plot y-axis |
readPCM | read pcm from a path |