Plot stacked logos for single or multiple DNA, RNA and amino acid sequence


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Documentation for package ‘motifStack’ version 1.0.4

Help Pages

addBlank "pfm" methods
addBlank-method "pfm" methods
colorset retrieve color setting for logo
DNAmotifAlignment align DNA motifs
getIC "pfm" methods
getIC-method "pfm" methods
matrixReverseComplement "pfm" methods
matrixReverseComplement-method "pfm" methods
pcm2pfm convert pcm to pfm
pfm "pfm" methods
pfm-class Class '"pfm"'
plot-method "pfm" methods
plotMotifLogo plot sequence logo
plotMotifLogoStack plot sequence logos stack
plotMotifLogoStackWithTree plot sequence logos stack with hierarchical cluster tree
plotXaxis plot x-axis
plotYaxis plot y-axis
readPCM read pcm from a path