class:Motif | Motif objects |
control.seq | control sequence for CTCF peaks |
ctcf.motifs | CTCF motifs predicted by motifRG |
ctcf.seq | sequence for CTCF peaks |
findMotif | De-novo discovery of distriminative motifs |
Motif-class | Motif objects |
motifHtmlTable | create of table of motifs |
motifLatexTable | create of table of motifs |
plotMotif | plot motif sequence matches |
refinePWMMotif | create a PWM (Position Weight Model) model given a initial set of motif matches and input sequences |
refinePWMMotifExtend | create an extended PWM (Position Weight Model) model given a initial set of motif matches and input sequences |
summaryMotif | summarize a list of motifs |