Collection of Merging Techniques for Gene Expression Data


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Documentation for package ‘inSilicoMerging’ version 1.2.3

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inSilicoMerging-package Collection of Merging Techniques for Gene Expression Data.
inSilicoMerging Collection of Merging Techniques for Gene Expression Data.
measureAsymmetry Calculate asymmetry index for (merged) ExpressionSet
measureGenesMeanCorrCoef Calculate gene mean correlation coefficient between two independent studies before and after applying batch effect removal methods.
measureGenesOverlap Calculate Genes Overlap index for (merged) ExpressionSet
measureSamplesMeanCorrCoef Calculate sample mean correlation coefficient between two independent studies before and after applying batch effect removal methods.
measureSamplesOverlap Calculate Samples Overlap index for (merged) ExpressionSet
measureSignificantGenesOverlap Compares the overlap in significant genes between two independent studies before and after applying batch effect removal methods.
merge General method to merge different ExpressionSets
plotDendrogram Create dendrogram from (merged) ExpressionSet
plotGeneWiseBoxPlot Create gene-wise boxplot from (merged) ExpressionSet
plotGeneWiseDensity Create gene-wise density plots from (merged) ExpressionSet
plotMDS Create double-labeled MDS plot from (merged) ExpressionSet
plotRLE Create RLE plot from (merged) ExpressionSet