Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays


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Documentation for package ‘affyPara’ version 1.18.0

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bgCorrectPara Parallelized Background Correction
boxplotPara Parallelized Box Plots for Microarray Data
class:vsnInputPara Class to contain input data and parameters for parallel vsn functions
combineMatrices Merge a list of split objects
computeExprSetPara Parallel generate a set of expression values
dim-method Class to contain input data and parameters for parallel vsn functions
distributeFiles Distribute files to slaves
justvsnPara Parallel fir of the vsn model
makeCluster Starting and Stopping SNOW Clusters
MAplotPara Parallelized relative M vs. A plots for Microarray Data
MAplotSer Parallelized relative M vs. A plots for Microarray Data
mergeAffyBatches Merge a list of split objects
ncol-method Class to contain input data and parameters for parallel vsn functions
normalizeAffyBatchConstantPara Parallelized scaling normalization
normalizeAffyBatchInvariantsetPara Parallelized Invariante Set normalization
normalizeAffyBatchLoessIterPara Parallelized partial loess normalization with permutation
normalizeAffyBatchLoessPara Parallelized loess normalization
normalizeAffyBatchQuantilesPara Parallelized quantile normalization
normalizeQuantilesPara Parallelized quantile normalization
nrow-method Class to contain input data and parameters for parallel vsn functions
preproPara Parallelized preprocessing
read.affybatchPara Parallelized Read-AffyBatch function
removeDistributedFiles Remove distributed files from slaves
rmaPara Parallelized PMA preprocessing
splitAffyBatch Functions to split objects into parts
splitFileVector Functions to split objects into parts
splitMatrix Functions to split objects into parts
stopCluster Starting and Stopping SNOW Clusters
summaryM1M2Para Parallel Quality Assessment Summary
vsn2Para Parallel fir of the vsn model
vsnInputPara Class to contain input data and parameters for parallel vsn functions
vsnInputPara-class Class to contain input data and parameters for parallel vsn functions
vsnrmaPara Parallel fir of the vsn model