binningC | Windowing of high-throughput 'C' interaction matrix |
CQC | Quality Control for high-throughput 'C' experiment |
detail | Class 'HTCexp' |
detail-method | Class 'HTCexp' |
detail-methods | Class 'HTCexp' |
discretize | Transform matrix of counts data into discrete matrix |
divide | Class 'HTCexp' |
divide-method | Class 'HTCexp' |
divide-methods | Class 'HTCexp' |
E14 | HiTC - 5C data |
export | Class 'HTCexp' |
export-method | Class 'HTCexp' |
export-methods | Class 'HTCexp' |
export.my5C | Export 'HTCexp' object to my5C website format |
exportC | Export 'HTCexp' object |
extractRegion | Extract a subset of the HTCexp object |
getExpectedCounts | Estimate expected interaction counts of a High-Throughput C intrachromsomal map based on the genomic distance between two loci |
HTCexp | Class 'HTCexp' |
HTCexp-class | Class 'HTCexp' |
id | Class 'HTCexp' |
id-method | Class 'HTCexp' |
id-methods | Class 'HTCexp' |
id<- | Class 'HTCexp' |
id<--method | Class 'HTCexp' |
id<--methods | Class 'HTCexp' |
import.my5C | Import data from my5C webtool |
importC | Import high-htroughput 'C' data |
intdata | Class 'HTCexp' |
intdata-method | Class 'HTCexp' |
intdata-methods | Class 'HTCexp' |
intdata<- | Class 'HTCexp' |
intdata<--method | Class 'HTCexp' |
intdata<--methods | Class 'HTCexp' |
intervalsDist | intervalsDist |
isBinned | Class 'HTCexp' |
isBinned-method | Class 'HTCexp' |
isBinned-methods | Class 'HTCexp' |
isIntraChrom | Class 'HTCexp' |
isIntraChrom-method | Class 'HTCexp' |
isIntraChrom-methods | Class 'HTCexp' |
mapC | Visualize 'C' interaction map |
MEF | HiTC - 5C data |
Nora_5C | HiTC - 5C data |
normPerExpected | Class 'HTCexp' |
normPerExpected-method | Class 'HTCexp' |
normPerExpected-methods | Class 'HTCexp' |
normPerReads | Class 'HTCexp' |
normPerReads-method | Class 'HTCexp' |
normPerReads-methods | Class 'HTCexp' |
normPerTrans | Class 'HTCexp' |
normPerTrans-method | Class 'HTCexp' |
normPerTrans-methods | Class 'HTCexp' |
normPerZscore | Class 'HTCexp' |
normPerZscore-method | Class 'HTCexp' |
normPerZscore-methods | Class 'HTCexp' |
plot | Class 'HTCexp' |
plot-method | Class 'HTCexp' |
plot-methods | Class 'HTCexp' |
range | Class 'HTCexp' |
range-method | Class 'HTCexp' |
range-methods | Class 'HTCexp' |
readBED | readBED |
removeIntervals | Remove intervals from HTC object |
seq_name | Class 'HTCexp' |
seq_name-method | Class 'HTCexp' |
seq_name-methods | Class 'HTCexp' |
setIntervalScale | Set x and y interval of the HTCexp object |
show | Class 'HTCexp' |
show-method | Class 'HTCexp' |
show-methods | Class 'HTCexp' |
substract | Class 'HTCexp' |
substract-method | Class 'HTCexp' |
substract-methods | Class 'HTCexp' |
x_intervals | Class 'HTCexp' |
x_intervals-method | Class 'HTCexp' |
x_intervals-methods | Class 'HTCexp' |
x_intervals<- | Class 'HTCexp' |
x_intervals<--method | Class 'HTCexp' |
x_intervals<--methods | Class 'HTCexp' |
y_intervals | Class 'HTCexp' |
y_intervals-method | Class 'HTCexp' |
y_intervals-methods | Class 'HTCexp' |
y_intervals<- | Class 'HTCexp' |
y_intervals<--method | Class 'HTCexp' |
y_intervals<--methods | Class 'HTCexp' |