HTqPCR-package | Analysis of High-Throughput qPCR data (HTqPCR) |
.readCtBioMark | Reading Ct values from qPCR experiments data into a qPCRset |
.readCtCFX | Reading Ct values from qPCR experiments data into a qPCRset |
.readCtLightCycler | Reading Ct values from qPCR experiments data into a qPCRset |
.readCtOpenArray | Reading Ct values from qPCR experiments data into a qPCRset |
.readCtPlain | Reading Ct values from qPCR experiments data into a qPCRset |
.readCtSDS | Reading Ct values from qPCR experiments data into a qPCRset |
cbind | Combine qPCRset objects |
cbind.qPCRset | Combine qPCRset objects |
changeCtLayout | Changing the dimensions (rows x columns) of qPCRset objects |
clusterCt | Clustering of qPCR Ct values |
exprs-method | Class "qPCRset" |
exprs<--method | Class "qPCRset" |
featureCategory | Class "qPCRset" |
featureCategory-method | Class "qPCRset" |
featureCategory<- | Class "qPCRset" |
featureCategory<--method | Class "qPCRset" |
featureClass | Class "qPCRset" |
featureClass-method | Class "qPCRset" |
featureClass<- | Class "qPCRset" |
featureClass<--method | Class "qPCRset" |
featureNames-method | Class "qPCRset" |
featureNames<--method | Class "qPCRset" |
featurePos | Class "qPCRset" |
featurePos-method | Class "qPCRset" |
featurePos<- | Class "qPCRset" |
featurePos<--method | Class "qPCRset" |
featureType | Class "qPCRset" |
featureType-method | Class "qPCRset" |
featureType<- | Class "qPCRset" |
featureType<--method | Class "qPCRset" |
filterCategory | Filter Ct values based on their feature categories. |
filterCtData | Filter out features (genes) from qPCR data. |
flag | Class "qPCRset" |
flag-method | Class "qPCRset" |
flag<- | Class "qPCRset" |
flag<--method | Class "qPCRset" |
getCt | Class "qPCRset" |
getCtHistory | Class "qPCRset" |
heatmapSig | Heatmap of deltadeltaCt values from qPCR data. |
HTqPCR | Analysis of High-Throughput qPCR data (HTqPCR) |
limmaCtData | Differentially expressed features with qPCR: limma |
mannwhitneyCtData | Differentially expressed features with qPCR: Mann-Whitney |
n.samples | Class "qPCRset" |
n.wells | Class "qPCRset" |
normalizeCtData | Normalization of Ct values from qPCR data. |
plotCtArray | Image plot of qPCR Ct values from an array format |
plotCtBoxes | Boxplots for qPCR Ct values. |
plotCtCard | Image plot of qPCR Ct values from a card format |
plotCtCategory | Summarising the feature categories for Ct values. |
plotCtCor | Correlation between Ct values from qPCR data |
plotCtDensity | Distribution plot for qPCR Ct values. |
plotCtHeatmap | Heatmap of qPCR Ct values. |
plotCtHistogram | Histrogram of Ct values from qPCR experiments. |
plotCtLines | Plotting Ct values from qPCR across multiple samples. |
plotCtOverview | Overview plot of qPCR Ct values across multiple conditions. |
plotCtPairs | Pairwise scatterplot of multiple sets of Ct values from qPCR data. |
plotCtPCA | PCA for qPCR Ct values. |
plotCtReps | Scatter plot of features analysed twice during each qPCR experiment. |
plotCtRQ | Plot the relative quantification of Ct values from qPCR experiments. |
plotCtScatter | Scatterplot of two sets of Ct values from qPCR data. |
plotCtSignificance | Barplot with Ct values between genes from qPCR. |
plotCtVariation | Plot variation in Ct values across replicates |
plotCVBoxes | Boxplots of CV for qPCR Ct values. |
qPCRpros | Example processed qPCR data |
qPCRraw | Example raw qPCR data. |
qPCRset-class | Class "qPCRset" |
rbind | Combine qPCRset objects |
rbind.qPCRset | Combine qPCRset objects |
readCtData | Reading Ct values from qPCR experiments data into a qPCRset |
sampleNames-method | Class "qPCRset" |
sampleNames<--method | Class "qPCRset" |
setCategory | Assign categories to Ct values from qPCR data. |
setCt<- | Class "qPCRset" |
setCtHistory<- | Class "qPCRset" |
show-method | Class "qPCRset" |
summary-method | Class "qPCRset" |
ttestCtData | Differentially expressed features with qPCR: t-test |
[-method | Class "qPCRset" |