Clonality-package | Clonality testing |
ave.adj.probes | Averaging of adjacent probes in copy number arrays |
chromosomePlots | Per-chromosome plots of the copy number arrays from a particular patient |
Clonality | Clonality testing |
clonality.analysis | Clonality testing using copy number data |
ECMtesting | Clonality testing of >=3 tumors using Extended Concordant Mutations (ECM) test based on LOH (Loss of Heterozygosity) profiles |
genomewidePlots | Plot of the genomewide copy number profiles of a pair of tumors. |
histogramPlot | Histrograms of Log-Likelihood Ratios |
LOHclonality | Clonality testing using LOH (Loss of Heterozygosity) profiles |
LRtesting3or4tumors | Clonality testing of 3 or 4 tumors using Likelihood model based on LOH (Loss of Heterozygosity) profiles |
splitChromosomes | Chromosome splitting |