BATRACHOCHYTRIUM_DENDROBATIDIS |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
Bimap |
Bimap objects and the Bimap interface |
Bimap-class |
Bimap objects and the Bimap interface |
Bimap-direction |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Bimap-envirAPI |
Environment-like API for Bimap objects |
Bimap-keys |
Methods for manipulating the keys of a Bimap object |
Bimap-toTable |
Methods for manipulating a Bimap object in a data-frame style |
BimapFormatting |
Formatting a Bimap as a list or character vector |
BOMBYX_MORI |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
BOS_TAURUS |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
BRANCHIOSTOMA_FLORIDAE |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
BRUGIA_MALAYI |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
DANIO_RERIO |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
DAPHNIA_PULEX |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
dbconn |
AnnDbObj objects |
dbConn-method |
AnnotationDb objects and their progeny, methods etc. |
dbconn-method |
AnnDbObj objects |
dbfile |
AnnDbObj objects |
dbfile-method |
AnnDbObj objects |
dbInfo |
AnnDbObj objects |
dbInfo-method |
AnnDbObj objects |
dbmeta |
AnnDbObj objects |
dbmeta-method |
AnnDbObj objects |
dbschema |
AnnDbObj objects |
dbschema-method |
AnnDbObj objects |
DEBARYOMYCES_HANSENII |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
DEFINITION |
Descriptions of available values for 'cols' and 'keytypes' for GO.db. |
Definition |
Class "GOTerms" |
Definition-method |
Class "GOTerms" |
DESCRIPTION |
Descriptions of available values for 'cols' and 'keytypes'. |
DICTYOSTELIUM_DISCOIDEUM |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
dim-method |
Methods for manipulating a Bimap object in a data-frame style |
direction |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
direction-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
direction<- |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
direction<--method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
DROSOPHILA_ANANASSAE |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
DROSOPHILA_GRIMSHAWI |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
DROSOPHILA_MELANOGASTER |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
DROSOPHILA_MOJAVENSIS |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
DROSOPHILA_PSEUDOOBSCURA |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
DROSOPHILA_VIRILIS |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
DROSOPHILA_WILLISTONI |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
eapply |
Environment-like API for Bimap objects |
eapply-method |
Environment-like API for Bimap objects |
ENSEMBL |
Descriptions of available values for 'cols' and 'keytypes'. |
ENSEMBLPROT |
Descriptions of available values for 'cols' and 'keytypes'. |
ENSEMBLTRANS |
Descriptions of available values for 'cols' and 'keytypes'. |
ENTAMOEBA_HISTOLYTICA |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
ENTREZID |
Descriptions of available values for 'cols' and 'keytypes'. |
ENZYME |
Descriptions of available values for 'cols' and 'keytypes'. |
EQUUS_CABALLUS |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
ESCHERICHIA_COLIK12 |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
EVIDENCE |
Descriptions of available values for 'cols' and 'keytypes'. |
EVIDENCEALL |
Descriptions of available values for 'cols' and 'keytypes'. |
exists |
Environment-like API for Bimap objects |
exists-method |
Environment-like API for Bimap objects |
extractSeqnameSet |
List the supported seqname styles for all supported organisms |
LEISHMANIA_MAJOR |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
length-method |
Methods for manipulating the keys of a Bimap object |
links |
Methods for manipulating a Bimap object in a data-frame style |
links-method |
Methods for manipulating a Bimap object in a data-frame style |
listAllSupportedSeqnameStyles |
List the supported seqname styles for all supported organisms |
listAllSupportedStylesBySpecies |
List the supported seqname styles for all supported organisms |
Lkeyname |
Methods for manipulating a Bimap object in a data-frame style |
Lkeyname-method |
Methods for manipulating a Bimap object in a data-frame style |
Lkeys |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Lkeys-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Lkeys<- |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Lkeys<--method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Llength |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Llength-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
loadDb |
AnnotationDb objects and their progeny, methods etc. |
loadDb-method |
AnnotationDb objects and their progeny, methods etc. |
LOTTIA_GIGANTEA |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
ls |
Environment-like API for Bimap objects |
ls-method |
Environment-like API for Bimap objects |
MACACA_MULATTA |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
MAGNAPORTHE_GRISEA |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
makeARABIDOPSISCHIP_DB |
Defunct Functions in Package 'AnnotationDbi' |
makeBOVINECHIP_DB |
Defunct Functions in Package 'AnnotationDbi' |
makeCANINECHIP_DB |
Defunct Functions in Package 'AnnotationDbi' |
makeCHICKENCHIP_DB |
Defunct Functions in Package 'AnnotationDbi' |
makeECOLICHIP_DB |
Defunct Functions in Package 'AnnotationDbi' |
makeFLYCHIP_DB |
Defunct Functions in Package 'AnnotationDbi' |
makeHUMANCHIP_DB |
Defunct Functions in Package 'AnnotationDbi' |
makeMOUSECHIP_DB |
Defunct Functions in Package 'AnnotationDbi' |
makePIGCHIP_DB |
Defunct Functions in Package 'AnnotationDbi' |
makeRATCHIP_DB |
Defunct Functions in Package 'AnnotationDbi' |
makeRHESUSCHIP_DB |
Defunct Functions in Package 'AnnotationDbi' |
makeWORMCHIP_DB |
Defunct Functions in Package 'AnnotationDbi' |
makeYEASTCHIP_DB |
Defunct Functions in Package 'AnnotationDbi' |
makeZEBRAFISHCHIP_DB |
Defunct Functions in Package 'AnnotationDbi' |
make_eg_to_go_map |
Create GO to Entrez Gene maps for chip-based packages |
make_go_to_eg_map |
Create GO to Entrez Gene maps for chip-based packages |
MAP |
Descriptions of available values for 'cols' and 'keytypes'. |
mappedkeys |
Methods for manipulating the keys of a Bimap object |
mappedkeys-method |
Methods for manipulating the keys of a Bimap object |
mappedLkeys |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
mappedLkeys-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
mappedRkeys |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
mappedRkeys-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
metadata-method |
AnnotationDb objects and their progeny, methods etc. |
mget |
Environment-like API for Bimap objects |
mget-method |
Environment-like API for Bimap objects |
MONODELPHIS_DOMESTICA |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
MONOSIGA_BREVICOLLIS |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
MUS_MUSCULUS |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
PAN_TROGLODYTES |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
PATH |
Descriptions of available values for 'cols' and 'keytypes'. |
PEDICULUS_HUMANUS |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
PFAM |
Descriptions of available values for 'cols' and 'keytypes'. |
PHYSCOMITRELLA_PATENS |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
PHYTOPHTHORA_RAMORUM |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
PHYTOPHTHORA_SOJAE |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
PLASMODIUM_FALCIPARUM |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
PLASMODIUM_VIVAX |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
PMID |
Descriptions of available values for 'cols' and 'keytypes'. |
PONGO_PYGMAEUS |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
POPULUS_TRICHOCARPA |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
print.probetable |
Print method for probetable objects |
PRISTIONCHUS_PACIFICUS |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
ProbeAnnDbBimap |
Bimap objects and the Bimap interface |
ProbeAnnDbBimap-class |
Bimap objects and the Bimap interface |
ProbeAnnDbMap |
Bimap objects and the Bimap interface |
ProbeAnnDbMap-class |
Bimap objects and the Bimap interface |
ProbeGo3AnnDbBimap |
Bimap objects and the Bimap interface |
ProbeGo3AnnDbBimap-class |
Bimap objects and the Bimap interface |
PROBEID |
Descriptions of available values for 'cols' and 'keytypes'. |
ProbeIpiAnnDbMap |
Bimap objects and the Bimap interface |
ProbeIpiAnnDbMap-class |
Bimap objects and the Bimap interface |
PROSITE |
Descriptions of available values for 'cols' and 'keytypes'. |
PUCCINIA_GRAMINIS |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
Rattribnames |
Methods for manipulating a Bimap object in a data-frame style |
Rattribnames-method |
Methods for manipulating a Bimap object in a data-frame style |
Rattribnames<- |
Methods for manipulating a Bimap object in a data-frame style |
Rattribnames<--method |
Methods for manipulating a Bimap object in a data-frame style |
RATTUS_NORVEGICUS |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
REFSEQ |
Descriptions of available values for 'cols' and 'keytypes'. |
revmap |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
revmap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
RHIZOPUS_ORYZAE |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
Rkeyname |
Methods for manipulating a Bimap object in a data-frame style |
Rkeyname-method |
Methods for manipulating a Bimap object in a data-frame style |
Rkeys |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Rkeys-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Rkeys<- |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Rkeys<--method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Rlength |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
Rlength-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
SACCHAROMYCES_CEREVISIAE |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
sample |
Environment-like API for Bimap objects |
sample-method |
Environment-like API for Bimap objects |
saveDb |
AnnotationDb objects and their progeny, methods etc. |
saveDb-method |
AnnotationDb objects and their progeny, methods etc. |
SCHISTOSOMA_MANSONI |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
SCHIZOSACCHAROMYCES_POMBE |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
SCLEROTINIA_SCLEROTIORUM |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
Secondary |
Class "GOTerms" |
Secondary-method |
Class "GOTerms" |
select |
AnnotationDb objects and their progeny, methods etc. |
select-method |
AnnotationDb objects and their progeny, methods etc. |
setInpBimapFilter |
Methods for getting/setting the filters on a Bimap object |
setInpBimapFilter-method |
Methods for getting/setting the filters on a Bimap object |
SGD |
Descriptions of available values for 'cols' and 'keytypes'. |
show-method |
AnnotationDb objects and their progeny, methods etc. |
show-method |
Methods for manipulating the keys of a Bimap object |
show-method |
Bimap objects and the Bimap interface |
show-method |
Class "GOTerms" |
SMART |
Descriptions of available values for 'cols' and 'keytypes'. |
SORGHUM_BICOLOR |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
species |
AnnotationDb objects and their progeny, methods etc. |
species-method |
AnnotationDb objects and their progeny, methods etc. |
STAGONOSPORA_NODORUM |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
STRONGYLOCENTROTUS_PURPURATUS |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
subset |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
subset-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
summary-method |
Bimap objects and the Bimap interface |
supportedSeqnames |
List the supported seqname styles for all supported organisms |
supportedSeqnameStyles |
List the supported seqname styles for all supported organisms |
SYMBOL |
Descriptions of available values for 'cols' and 'keytypes'. |
Synonym |
Class "GOTerms" |
Synonym-method |
Class "GOTerms" |
tagname |
Methods for manipulating a Bimap object in a data-frame style |
tagname-method |
Methods for manipulating a Bimap object in a data-frame style |
tail |
Methods for manipulating a Bimap object in a data-frame style |
tail-method |
Methods for manipulating a Bimap object in a data-frame style |
TAIR |
Descriptions of available values for 'cols' and 'keytypes'. |
TAKIFUGU_RUBRIPES |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
TERM |
Descriptions of available values for 'cols' and 'keytypes' for GO.db. |
Term |
Class "GOTerms" |
Term-method |
Class "GOTerms" |
testSeqnames |
List the supported seqname styles for all supported organisms |
TETRAHYMENA_THERMOPHILA |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
TETRAODON_NIGROVIRIDIS |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
THALASSIOSIRA_PSEUDONANA |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
THEILERIA_ANNULATA |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
THEILERIA_PARVA |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
toggleProbes |
Methods for getting/setting the filters on a Bimap object |
toggleProbes-method |
Methods for getting/setting the filters on a Bimap object |
toSQLStringSet |
Convert a vector to a quoted string for use as a SQL value list |
toTable |
Methods for manipulating a Bimap object in a data-frame style |
toTable-method |
Methods for manipulating a Bimap object in a data-frame style |
TRIBOLIUM_CASTANEUM |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
TRICHOMONAS_VAGINALIS |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
TRICHOPLAX_ADHAERENS |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |
TRYPANOSOMA_CRUZI |
Descriptions of available values for 'cols' and 'keytypes' for inparanpoid packages. |