Easy extraction of individual probes in Affymetrix tiling arrays


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Documentation for package ‘AffyTiling’ version 1.16.1

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AnalyzeTilingCelFiles Background correction and RNA normalization for CEL files from an Affymetrix tiling array.
AssociateWithGenes Associates a vector of probe positions with the nearest input transcription start site.
AssociateWithInterval Returns index of association between a probe and a set of genomic intervals.
Data used to demonstrate AffyTiling. Sample intensities for human promoter tiling array.
Einter Sample intensities for human promoter tiling array.
gene positions Position of known genes in the first 2 Mb of human chromosome 1-3.
intensities Sample intensities for human promoter tiling array.
KG Position of known genes in the first 2 Mb of human chromosome 1-3.
KnownGenes Sample intensities for human promoter tiling array.
parseBPMAP Returns information from a BPMAP file for select probes in an Affymetrix tiling array.
TilingCelFiles2Probesets Background correction and RNA normalization for CEL files from an Affymetrix tiling array.