leeBamViews

leeBamViews -- multiple yeast RNAseq samples excerpted from Lee 2009

Bioconductor version: 2.10

data from PMID 19096707; prototype for managing multiple NGS samples

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("leeBamViews")

To cite this package in a publication, start R and enter:

    citation("leeBamViews")

Documentation

PDF R Script managing multiple NGS samples with bamViews
PDF   Reference Manual

Details

biocViews CellBiology, DifferentialExpression, ExperimentData, Genetics, HighThroughputSequencing, RNAseq, RNAseqData
Depends R (>= 2.15.0), Biobase, Rsamtools(>= 0.1.50), BSgenome
Imports GenomicRanges, methods
Suggests GenomeGraphs, biomaRt, org.Sc.sgd.db, edgeR
System Requirements
License Artistic 2.0
URL
Depends On Me
Imports Me
Suggests Me EDASeq, GenomicRanges
Version 0.99.19

Package Downloads

Package Source leeBamViews_0.99.19.tar.gz
Windows Binary leeBamViews_0.99.19.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary leeBamViews_0.99.19.tgz
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