gene target tabale of miRNA for human/mouse used for MiRaGE package


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Documentation for package ‘miRNATarget’ version 0.99.1

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C H I M T

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conv_id miRNA conservation table of mouse/human, based upon TargetScanMouse/Human 6.1

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HS_conv_id miRNA conservation table of human
HS_refseq_to_affy_hc_g110 Conversion table between RefSeq and affy_hc_g110 for human
HS_refseq_to_affy_hg_focus Conversion table between RefSeq and affy_hg_focus for human
HS_refseq_to_affy_hg_u133a Conversion table between RefSeq and affy_hg_u133a for human
HS_refseq_to_affy_hg_u133a_2 Conversion table between RefSeq and affy_hg_u133a_2 for human
HS_refseq_to_affy_hg_u133b Conversion table between RefSeq and affy_hg_u133b for human
HS_refseq_to_affy_hg_u133_plus_2 Conversion table between RefSeq and affy_hg_u133_plus_2 for human
HS_refseq_to_affy_hg_u95a Conversion table between RefSeq and affy_hg_u95a for human
HS_refseq_to_affy_hg_u95av2 Conversion table between RefSeq and affy_hg_u95av2 for human
HS_refseq_to_affy_hg_u95b Conversion table between RefSeq and affy_hg_u95b for human
HS_refseq_to_affy_hg_u95c Conversion table between RefSeq and affy_hg_u95c for human
HS_refseq_to_affy_hg_u95d Conversion table between RefSeq and affy_hg_u95d for human
HS_refseq_to_affy_hg_u95e Conversion table between RefSeq and affy_hg_u95e for human
HS_refseq_to_affy_huex_1_0_st_v2 Conversion table between RefSeq and affy_huex_1_0_st_v2 for human
HS_refseq_to_affy_hugenefl Conversion table between RefSeq and affy_hugenefl for human
HS_refseq_to_affy_hugene_1_0_st_v1 Conversion table between RefSeq and affy_hugene_1_0_st_v1 for human
HS_refseq_to_affy_u133_x3p Conversion table between RefSeq and affy_u133_x3p for human
HS_refseq_to_agilent_cgh_44b Conversion table between RefSeq and agilent_cgh_44b for human
HS_refseq_to_agilent_wholegenome Conversion table between RefSeq and agilent_wholegenome for human
HS_refseq_to_canonical_transcript_stable_id Conversion table between RefSeq and canonical_transcript_stable_id for human
HS_refseq_to_ccds Conversion table between RefSeq and ccds for human
HS_refseq_to_codelink Conversion table between RefSeq and codelink for human
HS_refseq_to_embl Conversion table between RefSeq and embl for human
HS_refseq_to_ensembl_gene_id Conversion table between RefSeq and ensembl_gene_id for human
HS_refseq_to_ensembl_peptide_id Conversion table between RefSeq and ensembl_peptide_id for human
HS_refseq_to_ensembl_transcript_id Conversion table between RefSeq and ensembl_transcript_id for human
HS_refseq_to_entrezgene Conversion table between RefSeq and entrezgene for human
HS_refseq_to_hgnc_id Conversion table between RefSeq and hgnc_id for human
HS_refseq_to_hgnc_symbol Conversion table between RefSeq and hgnc_symbol for human
HS_refseq_to_hgnc_transcript_name Conversion table between RefSeq and hgnc_transcript_name for human
HS_refseq_to_illumina_humanht_12 Conversion table between RefSeq and illumina_humanht_12 for human
HS_refseq_to_illumina_humanwg_6_v1 Conversion table between RefSeq and illumina_humanwg_6_v1 for human
HS_refseq_to_illumina_humanwg_6_v2 Conversion table between RefSeq and illumina_humanwg_6_v2 for human
HS_refseq_to_illumina_humanwg_6_v3 Conversion table between RefSeq and illumina_humanwg_6_v3 for human
HS_refseq_to_interpro Conversion table between RefSeq and interpro for human
HS_refseq_to_ipi Conversion table between RefSeq and ipi for human
HS_refseq_to_merops Conversion table between RefSeq and merops for human
HS_refseq_to_pdb Conversion table between RefSeq and pdb for human
HS_refseq_to_pfam Conversion table between RefSeq and pfam for human
HS_refseq_to_phalanx_onearray Conversion table between RefSeq and phalanx_onearray for human
HS_refseq_to_protein_id Conversion table between RefSeq and protein_id for human
HS_refseq_to_refseq_dna Conversion table between RefSeq and refseq_dna for human
HS_refseq_to_refseq_genomic Conversion table between RefSeq and refseq_genomic for human
HS_refseq_to_refseq_peptide Conversion table between RefSeq and refseq_peptide for human
HS_refseq_to_rfam Conversion table between RefSeq and rfam for human
HS_refseq_to_rfam_gene_name Conversion table between RefSeq and rfam_gene_name for human
HS_refseq_to_rfam_transcript_name Conversion table between RefSeq and rfam_transcript_name for human
HS_refseq_to_smart Conversion table between RefSeq and smart for human
HS_refseq_to_tigrfam Conversion table between RefSeq and tigrfam for human
HS_refseq_to_ucsc Conversion table between RefSeq and ucsc for human
HS_refseq_to_unigene Conversion table between RefSeq and unigene for human
HS_refseq_to_uniprot_genename Conversion table between RefSeq and uniprot_genename for human
HS_refseq_to_wikigene_name Conversion table between RefSeq and wikigene_name for human

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id_conv Conversion table between refseq and various gene id/probe id

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MM_conv_id miRNA conservation table of mouse
MM_refseq_to_affy_mg_u74a Conversion table between RefSeq and affy_mg_u74a for mouse
MM_refseq_to_affy_mg_u74av2 Conversion table between RefSeq and affy_mg_u74av2 for mouse
MM_refseq_to_affy_mg_u74b Conversion table between RefSeq and affy_mg_u74b for mouse
MM_refseq_to_affy_mg_u74bv2 Conversion table between RefSeq and affy_mg_u74bv2 for mouse
MM_refseq_to_affy_mg_u74c Conversion table between RefSeq and affy_mg_u74c for mouse
MM_refseq_to_affy_mg_u74cv2 Conversion table between RefSeq and affy_mg_u74cv2 for mouse
MM_refseq_to_affy_moe430a Conversion table between RefSeq and affy_moe430a for mouse
MM_refseq_to_affy_moe430b Conversion table between RefSeq and affy_moe430b for mouse
MM_refseq_to_affy_moex_1_0_st_v1 Conversion table between RefSeq and affy_moex_1_0_st_v1 for mouse
MM_refseq_to_affy_mogene_1_0_st_v1 Conversion table between RefSeq and affy_mogene_1_0_st_v1 for mouse
MM_refseq_to_affy_mouse430a_2 Conversion table between RefSeq and affy_mouse430a_2 for mouse
MM_refseq_to_affy_mouse430_2 Conversion table between RefSeq and affy_mouse430_2 for mouse
MM_refseq_to_affy_mu11ksuba Conversion table between RefSeq and affy_mu11ksuba for mouse
MM_refseq_to_affy_mu11ksubb Conversion table between RefSeq and affy_mu11ksubb for mouse
MM_refseq_to_agilent_wholegenome Conversion table between RefSeq and agilent_wholegenome for mouse
MM_refseq_to_canonical_transcript_stable_id Conversion table between RefSeq and canonical_transcript_stable_id for mouse
MM_refseq_to_ccds Conversion table between RefSeq and ccds for mouse
MM_refseq_to_codelink Conversion table between RefSeq and codelink for mouse
MM_refseq_to_embl Conversion table between RefSeq and embl for mouse
MM_refseq_to_ensembl_gene_id Conversion table between RefSeq and ensembl_gene_id for mouse
MM_refseq_to_ensembl_peptide_id Conversion table between RefSeq and ensembl_peptide_id for mouse
MM_refseq_to_ensembl_transcript_id Conversion table between RefSeq and ensembl_transcript_id for mouse
MM_refseq_to_entrezgene Conversion table between RefSeq and entrezgene for mouse
MM_refseq_to_fantom Conversion table between RefSeq and fantom for mouse
MM_refseq_to_illumina_mousewg_6_v1 Conversion table between RefSeq and illumina_mousewg_6_v1 for mouse
MM_refseq_to_illumina_mousewg_6_v2 Conversion table between RefSeq and illumina_mousewg_6_v2 for mouse
MM_refseq_to_interpro Conversion table between RefSeq and interpro for mouse
MM_refseq_to_ipi Conversion table between RefSeq and ipi for mouse
MM_refseq_to_merops Conversion table between RefSeq and merops for mouse
MM_refseq_to_mgi_id Conversion table between RefSeq and mgi_id for mouse
MM_refseq_to_mgi_symbol Conversion table between RefSeq and mgi_symbol for mouse
MM_refseq_to_mgi_transcript_name Conversion table between RefSeq and mgi_transcript_name for mouse
MM_refseq_to_pdb Conversion table between RefSeq and pdb for mouse
MM_refseq_to_pfam Conversion table between RefSeq and pfam for mouse
MM_refseq_to_phalanx_onearray Conversion table between RefSeq and phalanx_onearray for mouse
MM_refseq_to_protein_id Conversion table between RefSeq and protein_id for mouse
MM_refseq_to_refseq_dna Conversion table between RefSeq and refseq_dna for mouse
MM_refseq_to_refseq_peptide Conversion table between RefSeq and refseq_peptide for mouse
MM_refseq_to_rfam Conversion table between RefSeq and rfam for mouse
MM_refseq_to_rfam_gene_name Conversion table between RefSeq and rfam_gene_name for mouse
MM_refseq_to_rfam_transcript_name Conversion table between RefSeq and rfam_transcript_name for mouse
MM_refseq_to_smart Conversion table between RefSeq and smart for mouse
MM_refseq_to_tigrfam Conversion table between RefSeq and tigrfam for mouse
MM_refseq_to_ucsc Conversion table between RefSeq and ucsc for mouse
MM_refseq_to_unigene Conversion table between RefSeq and unigene for mouse
MM_refseq_to_uniprot_genename Conversion table between RefSeq and uniprot_genename for mouse
MM_refseq_to_wikigene_name Conversion table between RefSeq and wikigene_name for mouse

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TBL2 Target gene table miRNA
TBL2_HS Target gene table miRNA of human
TBL2_MM Target gene table miRNA of mouse