Affymetrix zebrafish annotation data (chip zebrafish)

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Documentation for package ‘zebrafish.db’ version 2.7.1

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zebrafish Bioconductor annotation data package
zebrafish.db Bioconductor annotation data package
zebrafishACCNUM Map Manufacturer identifiers to Accession Numbers
zebrafishALIAS2PROBE Map between Common Gene Symbol Identifiers and Manufacturer Identifiers
zebrafishCHR Map Manufacturer IDs to Chromosomes
zebrafishCHRLENGTHS A named vector for the length of each of the chromosomes
zebrafishCHRLOC Map Manufacturer IDs to Chromosomal Location
zebrafishCHRLOCEND Map Manufacturer IDs to Chromosomal Location
zebrafishENSEMBL Map Ensembl gene accession numbers with Entrez Gene identifiers
zebrafishENSEMBL2PROBE Map Ensembl gene accession numbers with Entrez Gene identifiers
zebrafishENTREZID Map between Manufacturer Identifiers and Entrez Gene
zebrafishENZYME Map between Manufacturer IDs and Enzyme Commission (EC) Numbers
zebrafishENZYME2PROBE Map between Enzyme Commission Numbers and Manufacturer Identifiers
zebrafishGENENAME Map between Manufacturer IDs and Genes
zebrafishGO Map between Manufacturer IDs and Gene Ontology (GO)
zebrafishGO2ALLPROBES Map between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers in the subtree
zebrafishGO2PROBE Map between Gene Ontology (GO) and Manufacturer Identifiers
zebrafishLOCUSID Map between Manufacturer Identifiers and Entrez Gene
zebrafishMAPCOUNTS Number of mapped keys for the maps in package zebrafish.db
zebrafishORGANISM The Organism information for zebrafish
zebrafishORGPKG The Organism information for zebrafish
zebrafishPATH Mappings between probe identifiers and KEGG pathway identifiers
zebrafishPATH2PROBE Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers
zebrafishPFAM Map Manufacturer IDs to Pfam IDs
zebrafishPMID Map between Manufacturer Identifiers and PubMed Identifiers
zebrafishPMID2PROBE Map between PubMed Identifiers and Manufacturer Identifiers
zebrafishPROSITE Map Manufacturer IDs to PROSITE ID
zebrafishREFSEQ Map between Manufacturer Identifiers and RefSeq Identifiers
zebrafishSYMBOL Map between Manufacturer Identifiers and Gene Symbols
zebrafishUNIGENE Map between Manufacturer Identifiers and UniGene cluster identifiers
zebrafishUNIPROT Map Uniprot accession numbers with Entrez Gene identifiers
zebrafishUNIPROT2PROBE Map Uniprot accession numbers with Entrez Gene identifiers
zebrafishZFIN Map Zfin accession numbers with Entrez Gene identifiers
zebrafishZFIN2PROBE Map Zfin accession numbers with Entrez Gene identifiers
zebrafish_dbconn Collect information about the package annotation DB
zebrafish_dbfile Collect information about the package annotation DB
zebrafish_dbInfo Collect information about the package annotation DB
zebrafish_dbschema Collect information about the package annotation DB