Illumina HumanHT12v3 annotation data (chip illuminaHumanv3)


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Documentation for package ‘illuminaHumanv3.db’ version 1.12.2

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illuminaHumanv3 Bioconductor annotation data package
illuminaHumanv3.db Bioconductor annotation data package
illuminaHumanv3ACCNUM Map Manufacturer identifiers to Accession Numbers
illuminaHumanv3ALIAS2PROBE Map between Common Gene Symbol Identifiers and Manufacturer Identifiers
illuminaHumanv3ARRAYADDRESS Custom mappings added to the package
illuminaHumanv3CHR Map Manufacturer IDs to Chromosomes
illuminaHumanv3CHRLENGTHS A named vector for the length of each of the chromosomes
illuminaHumanv3CHRLOC Map Manufacturer IDs to Chromosomal Location
illuminaHumanv3CHRLOCEND Map Manufacturer IDs to Chromosomal Location
illuminaHumanv3CODINGZONE Custom mappings added to the package
illuminaHumanv3ENSEMBL Map Ensembl gene accession numbers with Entrez Gene identifiers
illuminaHumanv3ENSEMBL2PROBE Map Ensembl gene accession numbers with Entrez Gene identifiers
illuminaHumanv3ENSEMBLREANNOTATED Custom mappings added to the package
illuminaHumanv3ENTREZID Map between Manufacturer Identifiers and Entrez Gene
illuminaHumanv3ENTREZREANNOTATED Custom mappings added to the package
illuminaHumanv3ENZYME Map between Manufacturer IDs and Enzyme Commission (EC) Numbers
illuminaHumanv3ENZYME2PROBE Map between Enzyme Commission Numbers and Manufacturer Identifiers
illuminaHumanv3fullReannotation Custom mappings added to the package
illuminaHumanv3GENENAME Map between Manufacturer IDs and Genes
illuminaHumanv3GENOMICLOCATION Custom mappings added to the package
illuminaHumanv3GENOMICMATCHSIMILARITY Custom mappings added to the package
illuminaHumanv3GO Map between Manufacturer IDs and Gene Ontology (GO)
illuminaHumanv3GO2ALLPROBES Map between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers in the subtree
illuminaHumanv3GO2PROBE Map between Gene Ontology (GO) and Manufacturer Identifiers
illuminaHumanv3listNewMappings Custom mappings added to the package
illuminaHumanv3LOCUSID Map between Manufacturer Identifiers and Entrez Gene
illuminaHumanv3MAP Map between Manufacturer Identifiers and cytogenetic maps/bands
illuminaHumanv3MAPCOUNTS Number of mapped keys for the maps in package illuminaHumanv3.db
illuminaHumanv3NUID Custom mappings added to the package
illuminaHumanv3OMIM Map between Manufacturer Identifiers and Mendelian Inheritance in Man (MIM) identifiers
illuminaHumanv3ORGANISM The Organism information for illuminaHumanv3
illuminaHumanv3ORGPKG The Organism information for illuminaHumanv3
illuminaHumanv3OTHERGENOMICMATCHES Custom mappings added to the package
illuminaHumanv3OVERLAPPINGSNP Custom mappings added to the package
illuminaHumanv3PATH Mappings between probe identifiers and KEGG pathway identifiers
illuminaHumanv3PATH2PROBE Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers
illuminaHumanv3PFAM Map Manufacturer IDs to Pfam IDs
illuminaHumanv3PMID Map between Manufacturer Identifiers and PubMed Identifiers
illuminaHumanv3PMID2PROBE Map between PubMed Identifiers and Manufacturer Identifiers
illuminaHumanv3PROBEQUALITY Custom mappings added to the package
illuminaHumanv3PROBESEQUENCE Custom mappings added to the package
illuminaHumanv3PROSITE Map Manufacturer IDs to PROSITE ID
illuminaHumanv3REFSEQ Map between Manufacturer Identifiers and RefSeq Identifiers
illuminaHumanv3REPEATMASK Custom mappings added to the package
illuminaHumanv3REPORTERGROUPID Custom mappings added to the package
illuminaHumanv3REPORTERGROUPNAME Custom mappings added to the package
illuminaHumanv3SECONDMATCHES Custom mappings added to the package
illuminaHumanv3SECONDMATCHSIMILARITY Custom mappings added to the package
illuminaHumanv3SYMBOL Map between Manufacturer Identifiers and Gene Symbols
illuminaHumanv3SYMBOLREANNOTATED Custom mappings added to the package
illuminaHumanv3TRANSCRIPTOMICMATCHSIMILARITY Custom mappings added to the package
illuminaHumanv3UNIGENE Map between Manufacturer Identifiers and UniGene cluster identifiers
illuminaHumanv3UNIPROT Map Uniprot accession numbers with Entrez Gene identifiers
illuminaHumanv3UNIPROT2PROBE Map Uniprot accession numbers with Entrez Gene identifiers
illuminaHumanv3_dbconn Collect information about the package annotation DB
illuminaHumanv3_dbfile Collect information about the package annotation DB
illuminaHumanv3_dbInfo Collect information about the package annotation DB
illuminaHumanv3_dbschema Collect information about the package annotation DB