# Illumina Illumina Human Methylation 27k annotation data (chip IlluminaHumanMethylation27k)

## Documentation for package ‘IlluminaHumanMethylation27k.db’ version 1.4.6

- DESCRIPTION file.

## Help Pages

IlluminaHumanMethylation27k | Bioconductor annotation data package
IlluminaHumanMethylation27k.db | Bioconductor annotation data package
IlluminaHumanMethylation27kACCNUM | Map Manufacturer identifiers to Accession Numbers
IlluminaHumanMethylation27kALIAS2PROBE | Map between Common Gene Symbol Identifiers and Manufacturer Identifiers
IlluminaHumanMethylation27kBLAME | Who checked the latest build of these annotations into version control?
IlluminaHumanMethylation27kCHR | Map Manufacturer IDs to Chromosomes
IlluminaHumanMethylation27kCHRLENGTHS | A named vector for the length of each of the chromosomes
IlluminaHumanMethylation27kCHRLOC | Map Manufacturer IDs to Chromosomal Location
IlluminaHumanMethylation27kCHRLOCEND | Map Manufacturer IDs to Chromosomal Location
IlluminaHumanMethylation27kCOLORCHANNEL | Color Channel for locus assay
IlluminaHumanMethylation27kCPGCOORDINATE | Map Manufacturer IDs to genomic coordinate
IlluminaHumanMethylation27kCPGS | Number of CpG dinucleotides in target genomic sequence
IlluminaHumanMethylation27kDISTTOTSS | Map Manufacturer IDs to the distance to the transcript start of the nearest gene
IlluminaHumanMethylation27kENSEMBL | Map Ensembl gene accession numbers with Entrez Gene identifiers
IlluminaHumanMethylation27kENSEMBL2PROBE | Map Ensembl gene accession numbers with Entrez Gene identifiers
IlluminaHumanMethylation27kENTREZID | Map between Manufacturer Identifiers and Entrez Gene
IlluminaHumanMethylation27kENZYME | Map between Manufacturer IDs and Enzyme Commission (EC) Numbers
IlluminaHumanMethylation27kENZYME2PROBE | Map between Enzyme Commission Numbers and Manufacturer Identifiers
IlluminaHumanMethylation27kGENENAME | Map between Manufacturer IDs and Genes
IlluminaHumanMethylation27kGO | Map between Manufacturer IDs and Gene Ontology (GO)
IlluminaHumanMethylation27kGO2ALLPROBES | Map between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers in the subtree
IlluminaHumanMethylation27kGO2PROBE | Map between Gene Ontology (GO) and Manufacturer Identifiers
IlluminaHumanMethylation27kISCPGISLAND | Determine whether a probe is within a CpG island
IlluminaHumanMethylation27kLOCUSID | Map between Manufacturer Identifiers and Entrez Gene
IlluminaHumanMethylation27kMAP | Map between Manufacturer Identifiers and cytogenetic maps/bands
IlluminaHumanMethylation27kMAPCOUNTS | Number of mapped keys for the maps in package IlluminaHumanMethylation27k.db
IlluminaHumanMethylation27kNUID | Map Illumina probe IDs to the NuID representation of the target sequence
IlluminaHumanMethylation27kOMIM | Map between Manufacturer Identifiers and Mendelian Inheritance in Man (MIM) identifiers
IlluminaHumanMethylation27kORGANISM | The Organism information for IlluminaHumanMethylation27k
IlluminaHumanMethylation27kORGPKG | The Organism information for IlluminaHumanMethylation27k
IlluminaHumanMethylation27kPATH | Mappings between probe identifiers and KEGG pathway identifiers
IlluminaHumanMethylation27kPATH2PROBE | Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers
IlluminaHumanMethylation27kPFAM | Map Manufacturer IDs to Pfam IDs
IlluminaHumanMethylation27kPMID | Map between Manufacturer Identifiers and PubMed Identifiers
IlluminaHumanMethylation27kPMID2PROBE | Map between PubMed Identifiers and Manufacturer Identifiers
IlluminaHumanMethylation27kPROSITE | Map Manufacturer IDs to PROSITE ID
IlluminaHumanMethylation27kREFSEQ | Map between Manufacturer Identifiers and RefSeq Identifiers
IlluminaHumanMethylation27kSVNID | What is the in-house Subversion ID of this annotation package?
IlluminaHumanMethylation27kSYMBOL | Map between Manufacturer Identifiers and Gene Symbols
IlluminaHumanMethylation27kUNIGENE | Map between Manufacturer Identifiers and UniGene cluster identifiers
IlluminaHumanMethylation27kUNIPROT | Map Uniprot accession numbers with Entrez Gene identifiers
IlluminaHumanMethylation27kUNIPROT2PROBE | Map Uniprot accession numbers with Entrez Gene identifiers
IlluminaHumanMethylation27k_dbconn | Collect information about the package annotation DB
IlluminaHumanMethylation27k_dbfile | Collect information about the package annotation DB
IlluminaHumanMethylation27k_dbInfo | Collect information about the package annotation DB
IlluminaHumanMethylation27k_dbschema | Collect information about the package annotation DB
IlluminaHumanMethylation27k_getControls | Retrieve control probe addresses, optionally by control probe type
IlluminaHumanMethylation27k_getProbeOrdering | Retrieve probe IDs in the order loaded from the manifest
IlluminaHumanMethylation27k_getProbes | Retrieve probe addresses by design and/or color channel for processing