tweeDEseq

RNA-seq data analysis using the Poisson-Tweedie family of distributions

Bioconductor version: 2.10

Differential expression analysis of RNA-seq using the Poisson-Tweedie family of distributions.

Author: Juan R Gonzalez <jrgonzalez at creal.cat> and Mikel Esnaola <mesnaola at creal.cat> (with contributions from Robert Castelo <robert.castelo at upf.edu>)

Maintainer: Juan R Gonzalez <jrgonzalez at creal.cat>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("tweeDEseq")

To cite this package in a publication, start R and enter:

    citation("tweeDEseq")

Documentation

PDF	R Script	tweeDEseq: analysis of RNA-seq data using the Poisson-Tweedie family of distributions
PDF		Reference Manual

Details

biocViews	DifferentialExpression, HighThroughputSequencing, RNAseq, Software, Statistics
Depends	R (>= 2.12.0)
Imports	MASS, limma, edgeR, parallel, cqn
Suggests	tweeDEseqCountData, xtable
System Requirements
License	GPL (>= 2)
URL	http://www.creal.cat/jrgonzalez/software.htm
Depends On Me
Imports Me
Suggests Me
Version	1.2.1
Since	Bioconductor 2.9 (R-2.14)

Package Downloads

Package Source	tweeDEseq_1.2.1.tar.gz
Windows Binary	tweeDEseq_1.2.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	tweeDEseq_1.2.1.tgz
Package Downloads Report	Download Stats

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