spade

SPADE -- An analysis and visualization tool for Flow Cytometry

Bioconductor version: 2.10

SPADE, or Spanning tree Progression of Density normalized Events, is an analysis and visualization tool for high dimensional flow cytometry data that organizes cells into hierarchies of related phenotypes.

Author: M. Linderman, P. Qiu, E. Simonds, Z. Bjornsen

Maintainer: Michael Linderman <michael.d.linderman at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("spade")

To cite this package in a publication, start R and enter:

    citation("spade")

Documentation

PDF R Script spade package
PDF   Reference Manual
Text   LICENSE

Details

biocViews Clustering, FlowCytometry, GUI, GraphsAndNetworks, Software, Visualization
Depends R (>= 2.11), igraph
Imports Biobase, flowCore
Suggests flowViz
System Requirements
License GPL-2
URL http://cytospade.org
Depends On Me
Imports Me
Suggests Me
Version 1.2.0

Package Downloads

Package Source spade_1.2.0.tar.gz
Windows Binary spade_1.2.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary spade_1.2.0.tgz
Package Downloads Report Download Stats

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