r3Cseq
Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq)
Bioconductor version: 2.10
This package is an implementation of data analysis for the long-range interactions from 3C-seq assay.
Author: Supat Thongjuea, Bergen Center for Computational Science, Norway <supat.thongjuea at bccs.uib.no>
Maintainer: Supat Thongjuea <supat.thongjuea at bccs.uib.no>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("r3Cseq")
To cite this package in a publication, start R and enter:
citation("r3Cseq")
Documentation
| R Script | r3Cseq | |
| Reference Manual |
Details
| biocViews | HighThroughputSequencing,, Preprocessing, Sequencing, Software |
| Depends | R (>= 2.14.0), IRanges, BSgenome,ShortRead, rtracklayer, RColorBrewer, methods |
| Imports | |
| Suggests | BSgenome.Mmusculus.UCSC.mm9 |
| System Requirements | |
| License | GPL-3 |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.2.0 |
| Since | Bioconductor 2.9 (R-2.14) |
Package Downloads
| Package Source | r3Cseq_1.2.0.tar.gz |
| Windows Binary | r3Cseq_1.2.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | r3Cseq_1.2.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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