minfi
Analyze Illumina's 450k methylation arrays
Bioconductor version: 2.10
Tools for analyzing and visualizing Illumina's 450k array data
Author: Kasper Daniel Hansen, Martin Aryee
Maintainer: Kasper Daniel Hansen <khansen at jhsph.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("minfi")
To cite this package in a publication, start R and enter:
citation("minfi")
Documentation
| R Script | Minfi Guide | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DNAMethylation, DataImport, Microarray, Preprocessing, QualityControl, Software, TwoChannel |
| Depends | methods, BiocGenerics(>= 0.1.0), Biobase(>= 2.15.1), lattice, reshape, GenomicRanges |
| Imports | beanplot, RColorBrewer, nor1mix, siggenes, limma, preprocessCore, crlmm, matrixStats, mclust |
| Suggests | IlluminaHumanMethylation450kmanifest(>= 0.2.0), minfiData(>= 0.2.0), Biostrings |
| System Requirements | |
| License | Artistic-2.0 |
| URL | |
| Depends On Me | IlluminaHumanMethylation450kmanifest, minfiData |
| Imports Me | |
| Suggests Me | |
| Version | 1.2.0 |
| Since | Bioconductor 2.9 (R-2.14) |
Package Downloads
| Package Source | minfi_1.2.0.tar.gz |
| Windows Binary | minfi_1.2.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | minfi_1.2.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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