manta
Microbial Assemblage Normalized Transcript Analysis
Bioconductor version: 2.10
Tools for robust comparative metatranscriptomics.
Author: David M. Schruth <dschruth at uw.edu> and Adrian Marchetti <amarchetti at unc.edu>
Maintainer: David M. Schruth <dschruth at uw.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("manta")
To cite this package in a publication, start R and enter:
citation("manta")
Documentation
| R Script | manta | |
| Reference Manual | ||
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | Bioinformatics, DataImport, DifferentialExpression, GeneExpression, Genetics, HighThroughputSequencing, QualityControl, RNAseq, Software, Visualization |
| Depends | R (>= 1.8.0), methods, edgeR(>= 2.5.13) |
| Imports | Hmisc, caroline(>= 0.6.6) |
| Suggests | RSQLite, plotrix |
| System Requirements | |
| License | Artistic-2.0 |
| URL | http://manta.ocean.washington.edu/ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.2.0 |
| Since | Bioconductor 2.10 (R-2.15) |
Package Downloads
| Package Source | manta_1.2.0.tar.gz |
| Windows Binary | manta_1.2.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | manta_1.2.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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