keggorthology

graph support for KO, KEGG Orthology

Bioconductor version: 2.10

graphical representation of the Feb 2010 KEGG Orthology. The KEGG orthology is a set of pathway IDs that are not to be confused with the KEGG ortholog IDs.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("keggorthology")

To cite this package in a publication, start R and enter:

    citation("keggorthology")

Documentation

PDF	R Script	keggorthology overview
PDF		Reference Manual

Details

biocViews	Pathways,GraphsAndNetworks, Software
Depends	R (>= 2.5.0),stats,graph,hgu95av2.db
Imports	AnnotationDbi,graph,DBI, graph, grDevices, methods, stats, tools, utils
Suggests	RBGL,ALL
System Requirements
License	Artistic-2.0
URL
Depends On Me	gene2pathway
Imports Me
Suggests Me	MLInterfaces
Version	2.8.0
Since	Bioconductor 2.6 (R-2.11)

Package Downloads

Package Source	keggorthology_2.8.0.tar.gz
Windows Binary	keggorthology_2.8.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	keggorthology_2.8.0.tgz
Package Downloads Report	Download Stats

Workflows »

Common Bioconductor workflows include:

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Hosting provided by Fred Hutchinson Cancer Research Center