iASeq

iASeq: integrating multiple sequencing datasets for detecting allele-specific events

Bioconductor version: 2.10

It fits correlation motif model to multiple RNAseq or ChIPseq studies to improve detection of allele-specific events and describe correlation patterns across studies.

Author: Yingying Wei, Hongkai Ji

Maintainer: Yingying Wei <ywei at jhsph.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("iASeq")

To cite this package in a publication, start R and enter:

    citation("iASeq")

Documentation

PDF R Script iASeq Vignette
PDF   Reference Manual

Details

biocViews Bioinformatics, ChIPseq, RNAseq, SNP, Software
Depends R (>= 2.14.1)
Imports graphics, grDevices
Suggests
System Requirements
License GPL-2
URL
Depends On Me
Imports Me
Suggests Me
Version 1.0.0
Since Bioconductor 2.10 (R-2.15)

Package Downloads

Package Source iASeq_1.0.0.tar.gz
Windows Binary iASeq_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary iASeq_1.0.0.tgz
Package Downloads Report Download Stats

Workflows »

Common Bioconductor workflows include:

 

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center