genefu

Relevant Functions for Gene Expression Analysis, Especially in Breast Cancer.

Bioconductor version: 2.10

Description: This package contains functions implementing various tasks usually required by gene expression analysis, especially in breast cancer studies: gene mapping between different microarray platforms, identification of molecular subtypes, implementation of published gene signatures, gene selection, survival analysis, ...

Author: Benjamin Haibe-Kains, Markus Schroeder, Gianluca Bontempi, Christos Sotiriou, John Quackenbush

Maintainer: Benjamin Haibe-Kains <bhaibeka at jimmy.harvard.edu>, Markus Schroeder <mschroed at jimmy.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("genefu")

To cite this package in a publication, start R and enter:

    citation("genefu")

Documentation

PDF	R Script	genefu An Introduction (HowTo)
PDF		Reference Manual
Text		README

Details

biocViews	Classification, Clustering, DifferentialExpression, GeneExpression, Software, Visualization
Depends	R (>= 2.10), survcomp, mclust
Imports	amap
Suggests	GeneMeta, breastCancerVDX, breastCancerMAINZ, breastCancerTRANSBIG, breastCancerUPP, breastCancerUNT, breastCancerNKI, rmeta, Biobase, xtable
System Requirements
License	Artistic-2.0
URL	http://compbio.dfci.harvard.edu
Depends On Me
Imports Me
Suggests Me	breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP, breastCancerVDX
Version	1.6.1
Since	Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source	genefu_1.6.1.tar.gz
Windows Binary	genefu_1.6.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	genefu_1.6.1.tgz
Package Downloads Report	Download Stats

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