gaga

GaGa hierarchical model for high-throughput data analysis

Bioconductor version: 2.10

Implements the GaGa model for high-throughput data analysis, including differential expression analysis, supervised gene clustering and classification. Additionally, it performs sequential sample size calculations using the GaGa and LNNGV models (the latter from EBarrays package).

Author: David Rossell <rosselldavid at gmail.com>.

Maintainer: David Rossell <rosselldavid at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("gaga")

To cite this package in a publication, start R and enter:

    citation("gaga")

Documentation

PDF R Script Manual for the gaga library
PDF   Reference Manual

Details

biocViews OneChannel,MassSpectrometry,MultipleComparisons,DifferentialExpression,Classification, Software
Depends R (>= 2.8.0), Biobase, coda, EBarrays, mgcv
Imports
Suggests
System Requirements
License GPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me
Version 2.2.0
Since Bioconductor 2.2 (R-2.7)

Package Downloads

Package Source gaga_2.2.0.tar.gz
Windows Binary gaga_2.2.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary gaga_2.2.0.tgz
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