ffpe
Quality assessment and control for FFPE microarray expression data
Bioconductor version: 2.10
Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).
Author: Levi Waldron
Maintainer: Levi Waldron <lwaldron at hsph.harvard.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("ffpe")
To cite this package in a publication, start R and enter:
citation("ffpe")
Documentation
| R Script | ffpe package user guide | |
| Reference Manual |
Details
| biocViews | Bioinformatics, GeneExpression, Microarray, QualityControl, Software |
| Depends | R (>= 2.10.0), TTR, methods |
| Imports | Biobase, BiocGenerics, affy, lumi, methylumi, sfsmisc |
| Suggests | genefilter, affy, ffpeExampleData |
| System Requirements | |
| License | GPL (>2) |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.0.0 |
| Since | Bioconductor 2.10 (R-2.15) |
Package Downloads
| Package Source | ffpe_1.0.0.tar.gz |
| Windows Binary | ffpe_1.0.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | ffpe_1.0.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!
Contact us: webmaster@bioconductor.org
Hosting provided by Fred Hutchinson Cancer Research Center
Copyright © 2003 - 2012
