exomeCopy

CNV detection from exome sequencing read depth

Bioconductor version: 2.10

Detection of copy number variants (CNV) from exome sequencing samples, including unpaired samples. The package implements a hidden Markov model which uses positional covariates, such as background read depth and GC-content, to simultaneously normalize and segment the samples into regions of constant copy count.

Author: Michael Love

Maintainer: Michael Love <love at molgen.mpg.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("exomeCopy")

To cite this package in a publication, start R and enter:

    citation("exomeCopy")

Documentation

Details

Package Downloads