eisa

Expression data analysis via the Iterative Signature Algorithm

Bioconductor version: 2.10

The Iterative Signature Algorithm (ISA) is a biclustering method; it finds correlated blocks (transcription modules) in gene expression (or other tabular) data. The ISA is capable of finding overlapping modules and it is resilient to noise. This package provides a convenient interface to the ISA, using standard BioConductor data structures; and also contains various visualization tools that can be used with other biclustering algorithms.

Author: Gabor Csardi <csardi.gabor at gmail.com>

Maintainer: Gabor Csardi <csardi.gabor at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("eisa")

To cite this package in a publication, start R and enter:

    citation("eisa")

Documentation

PDF	R Script	ISA_internals.pdf
PDF	R Script	The eisa and the biclust packages
PDF	R Script	The Iterative Signature Algorithm for Gene Expression Data
PDF	R Script	tissues.pdf
PDF		Reference Manual

Details

biocViews	Classification, GeneExpression, Microarray, Software, Visualization
Depends	methods, isa2, Biobase, AnnotationDbi, Category, genefilter, DBI
Imports
Suggests	igraph0 (>= 0.5.5), Matrix, GOstats, GO.db, KEGG.db, biclust, MASS, xtable, ALL, hgu95av2.db, targetscan.Hs.eg.db, org.Hs.eg.db
System Requirements
License	GPL (>= 2)
URL
Depends On Me
Imports Me	ExpressionView
Suggests Me
Version	1.8.2
Since	Bioconductor 2.6 (R-2.11)

Package Downloads

Package Source	eisa_1.8.2.tar.gz
Windows Binary	eisa_1.8.2.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	eisa_1.8.2.tgz
Package Downloads Report	Download Stats

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