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clstutils
Tools for performing taxonomic assignment.
Bioconductor version: 2.10
Tools for performing taxonomic assignment based on phylogeny using pplacer and clst.
Author: Noah Hoffman
Maintainer: Noah Hoffman <ngh2 at uw.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("clstutils")
To cite this package in a publication, start R and enter:
citation("clstutils")
Documentation
| R Script | clst | |
| R Script | clstutils | |
| Reference Manual |
Details
| biocViews | Classification, HighThroughputSequencing, QualityControl, Software, Visualization |
| Depends | R (>= 2.10), clst, rjson, ape |
| Imports | lattice, RSQLite |
| Suggests | RUnit, RSVGTipsDevice |
| System Requirements | |
| License | GPL-3 |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.4.0 |
| Since | Bioconductor 2.8 (R-2.13) |
Package Downloads
| Package Source | clstutils_1.4.0.tar.gz |
| Windows Binary | clstutils_1.4.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | clstutils_1.4.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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