biovizBase

Basic graphic utilities for visualization of genomic data.

Bioconductor version: 2.10

The biovizBase package is designed to provide a set of utilities, color schemes and conventions for genomic data. It serves as the base for various high-level packages for biological data visualization. This saves development effort and encourages consistency.

Author: Tengfei Yin, Michael Lawrence, Dianne Cook

Maintainer: Tengfei Yin <yintengfei at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("biovizBase")

To cite this package in a publication, start R and enter:

    citation("biovizBase")

Documentation

PDF	R Script	An Introduction to biovizBase
PDF	R Script	intro-shrink-single.pdf
PDF	R Script	intro-shrinkageFun.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, Infrastructure, Preprocessing, Software, Visualization
Depends	R (>= 2.10), methods
Imports	methods, scales, Hmisc, RColorBrewer, dichromat, BiocGenerics, IRanges, GenomicRanges, Biostrings, Rsamtools, GenomicFeatures
Suggests	BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome, rtracklayer
System Requirements
License	Artistic-2.0
URL
Depends On Me	qrqc
Imports Me	qrqc
Suggests Me
Version	1.4.2
Since	Bioconductor 2.9 (R-2.14)

Package Downloads

Package Source	biovizBase_1.4.2.tar.gz
Windows Binary	biovizBase_1.4.2.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	biovizBase_1.4.2.tgz
Package Downloads Report	Download Stats

Workflows »

Common Bioconductor workflows include:

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Hosting provided by Fred Hutchinson Cancer Research Center